Archive for category Research

What is TaqMan and how is it helping scientists speed up the search for a cure for Rett syndrome?

As a former brand marketing professional this announcement caught my attention for two reasons: the brand name of the molecular tool “TaqMan” reminded me of Pac-Man; and I was amazed and grateful that Rett syndrome was spotlighted as a disorder that researchers were studying using this application.

This message also provided me a reassuring reminder that each and every day researchers around the globe get out of bed, leave their own families, travel to work, and spend countless hours of their time and talents working on behalf of people with Rett syndrome. They are indeed vital members of the Rett syndrome community.

Rett syndrome researcher Peng JinDr. Peng Jin is one of many Rett Researchers around the globe. He is  an assistant professor at the Department of Human Genetics at Emory University School of Medicine and is using an application called a “TaqMan Array Human MicroRNA Panel” to more rapidly and efficiently process genetic samples. Dr. Jin’s research is to better understand how changes in miRNA levels contribute to the disease pathology (study and diagnosis) of both Rett syndrome and Fragile X syndrome.

Our sample throughput has increased dramatically, said Dr. Jin. Before we had access to the TaqMan arrays, we could only analyze about two samples a day. We can now analyze these same samples in about two hours.

Just as the name TaqMan brings back great memories of Pac-Man from my childhood days, I am grateful that people like Dr. Jin now have a funny-named application called TaqMan that is now making his job and that of other Rett Researchers easier.      

 

Rett Press: Major Donation to Benefit Texas Children’s Neurological Research Institute

HOUSTON (June 19, 2007) – Texas Children’s Hospital today announced a $500,000 donation from Enbridge Energy Company, Inc. to benefit the Texas Children’s Neurological Research Institute, the world’s first dedicated pediatric neurological research facility. 

“This generous gift propels Texas Children’s Hospital’s efforts to perform groundbreaking research that is designed to lead to innovative treatment options for the millions of lives affected by neurological disorders,” said Dr. Huda Zoghbi, director, Texas Children’s Neurological Research Institute. “The Enbridge contribution is timelier than ever with nearly 450 million people worldwide affected with neurological diseases, 14 million of whom are America’s youth. This gift will not only lead to advances that will help patients with neurological disorders, but will serve as an investment in the future of our children.”  

The number of people afflicted by neurological disorders such as Rett syndrome, Down syndrome, autism, cerebral palsy, epilepsy and learning disabilities is on the rise.  These diseases are estimated to exceed half a trillion dollars annually in healthcare expenditures, lost productivity and related economic costs.  Brain-related disorders account for the majority of our nation’s long-term care costs and, when combined with psychiatric disorders, account for more hospitalization and prolonged care than almost all other diseases combined.

“Enbridge is committed to supporting key health initiatives in the North American communities where our employees live and work,” said Stephen J.J. Letwin, managing director, Enbridge Energy Company, Inc.  “We are proud to invest in this innovative neurological facility at Texas Children’s Hospital, which is pioneering cutting-edge research and treatment advances that ultimately benefit children worldwide.”

Houston is the headquarters for Enbridge’s worldwide natural gas transportation businesses and for two of Enbridge’s three U.S. publicly traded entities, Enbridge Energy Partners, L.P. and Enbridge Energy Management, L.L.C.

Texas Children’s Hospital, one of the top pediatric organizations in the world, recently announced that it is investing $1.5 billion over a four-year period in initiatives to secure its role as a pre-eminent pediatric institution and to anticipate the future of children’s health regionally, nationally and internationally. This is the largest expansion program ever by a single children’s hospital.

The planned initiatives, all of which are targeted for completion by 2010, focus largely on research and accessibility, two areas which the Texas Children’s board and its leadership believe are the keys to rapidly translating science into quality clinical care for children, as well as making that quality care accessible to all patients. Major projects include the creation of a comprehensive neurological research institute, the formation of a maternity center, expansion of existing research facilities and the development of one of the largest pediatric hospitals in a suburban setting

“This investment is not about buildings; it is about the responsibility we as a leader in pediatrics have to accelerate the translation of research into effective treatments,” said Mark A. Wallace, chief executive officer of Texas Children’s Hospital. “Corporate partners like Enbridge make it possible for us to commit the necessary resources to change the lives of countless children and families, in Houston and throughout the world.”

The Texas Children’s Neurological Research Institute will be the first comprehensive pediatric neurological research center of its kind in the world devoted to collaborative, unified efforts to understand the unique issues of the child’s brain structure, development patterns and related diseases.

The institute will combine research, treatment and education, assisting families with children suffering cognitive disorders and scientists committed to finding treatments and cures. Additionally, because so much of this work will be done using genetic models of neurodevelopmental and neurodigenerative diseases, it is anticipated that findings will have a major impact on adult diseases such as Alzheimer and Parkinson diseases.

About Texas Children’s Hospital:
As one of the nation’s largest pediatric hospitals, Texas Children’s Hospital is renowned for its expertise and breakthrough development in the treatment of cancer, premature infants, cardiogenic disorders, diabetes, asthma, HIV/AIDS and attention-related disorders.   Since opening its doors in 1954, the Texas Children’s Hospital has cared for more than 1 million children from every corner of the world and has had more than 2 million patient encounters a year.  Internationally recognized, the hospital is ranked in the top five among children’s hospitals by both Child and U.S. News and World Report. 
 
About Enbridge Energy Company, Inc
Enbridge Energy Company, Inc., is an indirect wholly owned subsidiary of Enbridge Inc. of Calgary, Alberta and is the general partner of Enbridge Energy Partners, L.P. (www.enbridgepartners.com) (the “Partnership”), which owns and operates a diversified portfolio of crude oil and natural gas transportation systems in the United States. The Partnership’s principal crude oil system is the largest transporter of growing oil production from western Canada. The system’s deliveries to refining centers in the U.S. Midwest account for approximately 12 percent of total U.S. oil imports; while deliveries to Ontario, Canada satisfy approximately 60 percent of refinery demand in that region. The Partnership’s natural gas gathering, treating, processing and transmission assets, which are principally located onshore in the active Mid-Continent and Gulf Coast area, deliver more than 2 billion cubic feet of natural gas daily. Enbridge Energy Management, L.L.C. (www.enbridgemanagement.com) manages the business and affairs of the Partnership and its sole asset is an approximate 14 percent interest in the Partnership. For more about Enbridge in the United States, go to www.enbridgeUS.com.

Rett Press: Big Bucks: Novartis focusing on rare diseases such as Rett Syndrome

Source

Forbes Magazine, May 21, 2007 edition

Summary

"For years big drugmakers ignored rare diseases. Now Novartis aims to reap billions of dollars by focusing on them. Rare diseases were long relegated to the backwaters of the drug business, targeted by tiny biotech companies, if at all, and often ignored by drug giants in their search for billion-dollar franchises. But Novartis is in pitched pursuit of some of the more obscure maladies in the world."

The article indicates that "Novartis has compounds in preclinical tests that target Rett syndrome, a rare inherited brain disorder".

Link

http://forbes.com/forbes/2007/0521/060_print.html

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An explanation for another familial case of Rett syndrome: maternal germline mosaicism

Abstract

Rett syndrome (RTT; OMIM#312750) is a severe neurodevelopmental disorder that affects mainly girls. It has an estimated incidence of 1:10 000–15 000 females. Mutations in the X-linked gene methyl CpG-binding protein 2 (MECP2) have been found in most patients.

The most accepted explanation for the sex bias is that the Rett mutation in sporadic cases has its origin in the paternal germline X chromosome and can thus only be transmitted to females. The majority of cases are sporadic (99.5%) but some familial cases have been described. These cases can either be explained by germline mosaicism or by asymptomatic carrier mothers with skewing of X-inactivation towards the wild-type MECP2 allele.

We describe one of the few familial cases of RTT in which a maternal germline mosaicism is the most likely explanation. The mutation p.Arg270fs (c.808delC) was identified in both a girl with classical RTT and her brother who had the severe neurological phenotype usually described in males. The mutation was absent in DNA extracted from blood of both parents.

These type of events must be taken into consideration in the genetic counselling of families after the diagnosis of a first case of RTT in a female or a MECP2 mutation in a male.

Researchers

Margarida Venâncio1, Mónica Santos2, Susana Aires Pereira3, Patrícia Maciel2 and Jorge M Saraiva1

  1. 1Serviço de Genética Médica, Hospital Pediátrico de Coimbra, Coimbra, Portugal
  2. 2Instituto de Ciências da Vida e da Saúde (ICVS), Escola das Ciências da Saúde, Universidade do Minho, Braga, Portugal
  3. 3Serviço de Pediatria, Centro Hospitalar de Vila Nova de Gaia, Portugal

Correspondence: Professor JM Saraiva, Serviço de Genética Médica, Hospital Pediátrico de Coimbra, Av Bissaya Barreto, 3000-075 Coimbra, Portugal. Tel: +351 239 480 638; Fax: +351 239 717 216; E-mail: j.saraiva@hpc.chc.min-saude.pt

Publication

European Journal of Human Genetics advance online publication 18 April 2007; doi: 10.1038/sj.ejhg.5201835

Received 29 September 2006; Revised 8 March 2007; Accepted 17 March 2007; Published online 18 April 2007.

Abstract Source Link

http://www.nature.com/ejhg/journal/vaop/ncurrent/abs/5201835a.html

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Researchers discover gene that causes Noonan Syndrome

Summary

ScienceDaily.com reported today that in the April 19, 2007 Issue of Neuron researchers from the Hospital for Sick Children and University of Toronto report the discovery of the genetic malfunction that causes a form of mental retardation called Noonan Syndrome (NS).

NS is a relatively common genetic disorder, occurring in one of every 2,500 live births. It is characterized by congenital heart defects, short stature, learning disabilities, and mental retardation.

The researchers speculated that “genetic perturbations such as those seen in NS, or perhaps even in more commonly studied disorders such as Rett Syndrome, might first perturb cell genesis, and then this might in turn alter many later aspects of neural development, ultimately resulting in impaired circuitry and cognitive dysfunction.”

Story Link

http://www.sciencedaily.com/releases/2006/10/061018151037.htm

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Clinical Trial: Clinical and Immunological Investigations of Subtypes of Autism

Purpose

The purpose of this study is to learn more about autism and its subtypes (including Rett Syndrome). Autism is a developmental disorder in which children have problems with communication and social skills and display restricted interests and repetitive behaviors.

This study has several goals. One aim is to look at types of autism that are known, such as the regressive subtype, (where skills are lost). We will explore whether there is a unique change in immune functioning related to this subtype. Another aim is to serve as one of the sites that will pilot a larger natural history study, entitled Autism Phenome Project. The goal is to further understand autism by identifying other subtypes.

We will look at several types of medical issues that may be related to autism, including immunologic problems. Children will be followed over the course of several years. We aim to capture medical problems that may be related to autism as they develop, and study outcomes in areas such as behavior and language, in order to explore known and new subtypes of autism.

Normally developing children (aged 1-6) and children with autism (age 1-6), developmental delays other than autism (age 2-6), or Rett’s disorder (age 1-4) may be eligible for this study.

Depending on each child’s study group and age, participants may undergo the following tests and procedures:

Baseline Visit

  • Medical and developmental history, physical examination, psychological, cognitive and medical tests to assess symptoms of autism or other developmental disorders, photographs of the child’s face, collection of hair, urine and baby teeth samples. If available, hair samples from the baby’s first haircut and from the biological mother’s hair are also collected.
  • Overnight electroencephalogram (EEG; for children autism developmental delays and Rett Syndrome): A special cap with electrodes is placed on the child’s head to measure brain waves (brain electrical activity) while the child sleeps in the hospital overnight. Healthy volunteers do not undergo this procedure.
  • Magnetic resonance imaging (MRI) scan: The child stays in the scanner, lying still for 10 to 15 minutes at a time. Since it may be difficult for the child to lie still, the test may be scheduled for a time when the child is likely to be sleepy, or the child may be sedated.
  • Lumbar puncture (for some children in the autism, developmental delay and Rett Syndrome groups). This test may be done under sedation.

Follow-Up Visits

Follow-up visits are scheduled at different intervals, depending on study group, age and aspect of the study the child is enrolled in. The visits include a short interview session with the child’s caregiver and assessment of the child’s development and behavior. Some of the assessment measures used during the baseline examination are repeated, including symptoms ratings, behavioral tests and a blood test. For some children, the final visit will include repeats of the medical procedures.

Study Type: Observational
Study Design: Natural History

Official Title: Clinical and Immunological Investigations of Subtypes of Autism

Further study details as provided by National Institutes of Health Clinical Center (CC):
Expected Total Enrollment:  250

Study start: February 2006

The current investigation will focus on the interrelationship between regression in autism and immune dysfunction. We propose to conduct a longitudinal natural history study that will result in a sample of 50 children with autism and strictly defined regression, 50 children with autism and no history of regression, 50 typically developing children, and 25 children who meet criteria for Rett’s Disorder (a genetic disorder in which children have autistic features with clear regression). Subjects will be 12-48 months of age at study entry in order to capture regression as close to its onset as possible. Systematic prospective evaluations will be utilized in order to provide validation to the phenomenon of regression in autism, determine diagnostic and functional outcomes, and evaluate behavioral, medical and immunologic functioning. These evaluations will include comprehensive medical history, behavioral assessment, physical and neurologic examination, sleep EEG, structural MRI, blood work for laboratory assays, and for some children, lumbar puncture. In an investigation of potential immunologic abnormalities and associated neuroinflammation, repeated assessments are necessary to determine whether both behavioral and/or immunologic parameters are due to state versus trait alterations: elements of these assessments will be conducted every 6 to 12 months, depending on the child’s age.

Our objective is to determine if there is a unique alteration in immune function among autistic children with a regressive clinical course. Our primary hypothesis is that at least some children with regressive autism will have abnormalities in immune function. These abnormalities will not be found among autistic children without a regressive course nor will they be found among children without an autistic spectrum disorder. Our specific aims are:

Specific Aim #1: To characterize and validate the regressive phenotype in children with autism.

Working hypothesis: Children with the diagnosis of autism who had a regressive clinical course can be reliably distinguished from children with non-regressive autism, Rett’s Disorder and healthy children. When compared to children with non-regressive autism, the history of children in the regressive group will consist of similar or higher skill levels prior to regression, and lower skill levels following regression.

Specific Aim #2: To characterize the immune response in children with autism.

Working Hypothesis 2a: Distinct immunologic responses and cytokine abnormalities will be evident in children in the regressive autism sample, but not in the non-regressive autism, Rett’s Disorder, or typically developing samples.

Working Hypothesis 2b: MRI scans will reveal regional neuroinflammation among children in the regressive autism sample, but not in the non-regressive autism, Rett’s Disorder, or typically developing samples.

Specific Aim #3: To identify neurobiologic markers for autism through the techniques of metabolomics, proteomics and genomics (e.g. gene expression profiles).

Working hypothesis: These neurobiologic markers will reliably differentiate between regressive autism, non-regressive autism, Rett’s Disorder, and typically developing children.

In addition, although progress has been made in identifying children affected by autism, little attention has been paid to the different manifestations of autism (or autisms). As has been demonstrated in "diabetes" and "cancer", it is expected that the differences between individuals with autism may be as informative as their behavioral similarities. Complementing this study that investigates one possible subtype (regression), we propose to pilot a phenomenologic investigation to identify other biological and behavioral subgroups of autistic individuals, in order to facilitate investigations of etiology, pathophysiology, treatment and prevention. The present investigation thus includes a pilot study to evaluate feasibility of conducting a large-scale, multi-site longitudinal investigation of 1,800 children (600 children with autism, 600 healthy controls, and 600 children with developmental delays). The protocol has been approved by the UC-Davis IRB (see attachments) and the study is currently underway at the M.I.N.D. Institute in Sacramento, California. NIMH is an ideal second site for the protocol, because of the overlap between the design of this regression study with their Autism Phenome Project. Children participating in 06-M-0102 will be invited to participate in this study; if interested, their data will be entered into the Phenome study. The age at study entry for the Phenome study (2 – 6 years) is slightly older than the original regression study, so we will recruit up to 25 children with autism and 25 age-/sex-matched healthy controls to this investigation. In addition, as many as 25 children (ages 2 – 6 years) with developmental delays (without autism) will be recruited as contrast subjects.

Eligibility

Ages Eligible for Study:  1 Year   -   6 Years,  Genders Eligible for Study:  Both

Accepts Healthy Volunteers

Inclusion Criteria

The sample at study endpoint will contain 50 children diagnosed with idiopathic autism and regression (AUT-R), 50 children diagnosed with idiopathic autism (and no history of regression; AUT-NR), 25 children with Rett’s Disorder (RTT) and 50 typically developing children (TYP), matched on ethnicity, sex, chronological age and daycare enrollment. Matching for daycare setting (home versus setting with other children) will be attempted due to the potentially greater immunologic challenge experienced by children in daycare settings. The age range of all groups will be between 12 and 48 months at first visit. We will over-recruit for children in the 12-36 month age range, in order to maximize participants of the age when regression associated with the autism diagnosis is most likely.

The Phenome Project Pilot will also enroll an additional 25 children with autism and 25 age-/sex-matched healthy controls, aged 2-6. In addition, as many as 25 children (ages 2 – 6 years) with developmental delays (without autism) will be recruited as contrast subjects.

Regression will be defined as:

Language loss: Loss of at least 3 spontaneously meaningful words (excluding mama or dada) used for at least a month, and lost for at least a month.

AND/OR

Nonverbal communication/social loss: Loss of more than one nonverbal communicative behavior (e.g. gestures, joint attention, eye contact, imagination, pretend play, sharing, showing, watching children, orienting to name, social smiling, social games, spontaneous imitation of actions, response to social overtures).

Autism groups (AUT-R & AUT-NR): Children with a diagnosis of autism or referral from professional with concerns of a diagnosis of autism will be evaluated with the ADI-R and ADOS. Those meeting research criteria for autism will be included.

Although there is overlap in the age period for regression specified in this protocol (regression between 15-30 months) and that described for childhood disintegrative disorder (CDD) (the DSM-IV criteria for CDD indicate apparently normal development for the first 2 years after birth), the criteria for CDD also indicate a diagnosis can only be made if symptoms are not better accounted for by another pervasive developmental disorder such as autism. Symptoms of CDD that separate it from autism include loss of acquired skills in areas such as motor skills and bowel or bladder control, while the focus of the current study is on regression in core symptoms of autism (i.e. socio-communicative skills). Thus, the current protocol will include children with regression over 2 who meet criteria for autism, but not those who only meet criteria for CDD.

Rett’s Disorder group (RTT): Positive genetic screen for MeCP2 genetic mutation.

Typically Developing control group (TYP): No diagnosis of developmental delay and no first-degree relatives with history of developmental problems.

Developmental Delay group (DD): Developmental scores (Performance Quotient and Verbal Quotient) greater than 1.5 standard deviations below mean on Mullens Scale of Early Learning

Exclusion Criteria:

  1. Known genetic defect (e.g. Fragile X, Down Syndrome, Tuberous Sclerosis, etc.). The Developmentally Delayed group may include children with such defects.
  2. Significant prematurity at birth (less than 32 weeks gestation); birthweight significantly below normal for gestational age (SGA- small for gestational age); or diagnosis of cerebral palsy.
  3. If behavioral management issues (e.g. self-injury, aggressiveness) are severe to the extent that the screening protocol was aborted.

Location and Contact Information

Please refer to this study by ClinicalTrials.gov identifier  NCT00298246
Patient Recruitment and Public Liaison Office      (800) 411-1222    prpl@mail.cc.nih.gov
TTY      1-866-411-1010
Locations: United States
California
University of California, Davis, Davis,  California,  95616
District of Columbia
Childrens National Medical Center, Washington,  District of Columbia
Maryland
National Institutes of Health Clinical Center, 9000 Rockville Pike, Bethesda,  Maryland
Johns Hopkins University, Baltimore,  Maryland
Tennessee
Vanderbilt University, Nashville,  Tennessee

More Information

Study ID Numbers:  060102; 06-M-0102
Last Updated:  March 9, 2007
Record first received:  March 1, 2006
ClinicalTrials.gov Identifier:  NCT00298246
Health Authority: United States: Federal Government

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